Not sure if you did this but here's what I do.
I do a piston to valve check with only the #1 piston installed. If the clearance turns out to be too close, I would only have to pull one piston instead of 8 to have the valve reliefs deepened. Depending on how much would be called for, the assembly may need to be re-balanced or, in a couple cases, new pistons used. New pistons would be called for if the cut would have to be too deep for safety.
I fabricate round patches of PlayDough (yep, I use that too) and place them across the valve reliefs on the #1 piston. Before placing them on the piston, I coat them on both sides with engine oil to prevent the dough from sticking to the valves/piston.
I install the head gasket I'm going to use and the driver's side head that I'm going to run. I torque down all the head bolts. Some guys only install several bolts, but I torque them all just to be sure I'm getting full gasket compression, especially when running a high-lift cam or high ratio rocker arms, like 1.7/1.8s.
I install the #1 intake and exhaust lifters, pushrods and rocker arms. For a mechanical cam I set the valve lash; for hydraulic I set the preload - usually 1/2 turn from zero lash. I use the EO/IC method.
I then slowly manually turn the crank two complete revolutions while feeling for any sign of interference or binding. Binding could indicate the valve head is actually touching the piston.
I then remove the rocker arms, pushrods and cylinder head.
I carefully remove the depressed PlayDough and, using a very sharp razor blade, I slice through it. I look for the thinnest part and measure it's thickness. In the past I've used a digital caliper OR even stacked feeler gauges, depending on where I'm working and what's available at the time.
I look for .100 on the intake dough and .120 on the exhaust dough. That's the amount of clearance there'll be between the intake valve and the piston and the exhaust valve and the piston. Others may prefer different clearances though. To me, much below .100 is a crap shoot if the engine over-revs.
Some builders may use a different method but I prefer Slice and measure.
Jake